[gmx-users] converting .xpm to .eps

[Hector Manuel Manzanilla Granados]

Hi, I need some help.
In these  days, I install one NVIDIA target (GTX 760 on UBUNTU 12.04), 
together with
toolkit 5.5 of CUDA. Apparently  CUDA runs fine, the problem is that
I can't to compile GROMACS in CUDA, I think that have some mistake in 
the
installation of cuda, may I somebody help me please?. A frend 
recommended me do the
following:



Instalación gromacs

----------------------------------

sudo apt-get install cmake

wget ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.4.tar.gz

tar xzvf gromacs-.6.4.tar.gz

cd gromacs-4.6.4/

mkdir build

cd build/

cmake .. -DGMX_BUILD_OWN_FFTW=ON -DGMX_GPU=ON
-DCUDA_TOOLKIT_ROOT_DIR=/usr/local/cuda-5.5

make

make install

export PATH=$PATH:/usr/local/gromacs/bin










I check the manual, apparantly there isn't any problem, however it 
fail, I have some doubt about of
path in the .bashr. Probably if the new version of CUDA. If anyone can 
suggest me
something I'll be greatfully, i.e., probably anyone can show me his 
final lines (path) in their
./bashr.

best greetings.

Thanks.
   


On Fri, 20 Dec 2013 10:04:12 +0530
  Nidhi Jatana <nidhijatana at bic-svc.ac.in> wrote:
> Dear Sir/Madam
> Please find attached the file containing the error.
> 
> Thanking you
> 
> Regards
> -- 
> Nidhi Jatana
> Senior Research Fellow
> Bioinformatics Center
> Sri Venkateswara College
> (University of Delhi)
> Dhaula Kuan
> New Delhi-110021.
> 
> 
> 
> On Thu, Dec 19, 2013 at 7:44 PM, Carsten Kutzner <ckutzne at gwdg.de> 
>wrote:
> 
>> On 12/19/2013 12:53 PM, Nidhi Jatana wrote:
>>
>>> Dear Sir/Madam
>>> I generated the atomic density plot using g_densmap by giving the
>>> following
>>> command:
>>> g_densmap -f *.xtc -s *.pdb -n *.ndx -o *.xpm
>>>
>>> The calculation completed successfully but when I am trying to 
>>>convert
>>> .xpm
>>> file to .eps file using xpm2ps command, its giving error and aborts.
>>>
>> What is the error message?
>>
>> If I use your set of commands with Gromacs 4.6.4, I can successfully 
>>create
>> an EPS file.
>>
>> Carsten
>>
>>
>>> xpm2ps -f *.xpm -o *.eps -rainbow red -xpm *.xpm
>>>
>>> I have tried many options with setting -bx and -by but of no help. I 
>>>also
>>> tried taking the .m2p file but the problem persist. Please find 
>>>attached
>>> the .m2p file for reference. Please help me with this.
>>>
>>> Thanking you
>>>
>>> Regards
>>>   --
>>> Nidhi Jatana
>>> Senior Research Fellow
>>> Bioinformatics Center
>>> Sri Venkateswara College
>>> (University of Delhi)
>>> Dhaula Kuan
>>> New Delhi-110021.
>>>
>>>
>>>
>> --
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