[gmx-users] MD simulation of lipid bilayers
jalemkul at vt.edu
Sat Dec 28 17:13:38 CET 2013
On 12/28/13, 7:45 AM, Andrew Bostick wrote:
> Hi all
> I have a general question.
> In the MD simulation of lipid bilayers in papers, almost, most of the
> parameters calculated by gromacs is symmetric between top and bottom
> leaflet of bilayer. Is this symmetry obligatory?
No, it is not obligatory.
> If in my case, for example density is not symmetry, is there problem?
Not necessarily. You'll have to define what is asymmetric, though - the number
of lipids or their type?
Justin A. Lemkul, Ph.D.
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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