[gmx-users] Using AMBER FF with GROMACS

George Patargias gpat at bioacademy.gr
Wed Feb 6 12:48:13 CET 2013


Hello

Apologies if this topic has been already discussed; I didn't manage to
find something relevant on the list.

How safe is to use the AMBER FF with GROMACS? I am aware of the validation
for the ffamber ports here

http://ffamber.cnsm.csulb.edu/#validation

and here

Sorin & Pande (2005), Biophysical Journal, 88, 2472-2493.

The new GROMACS distributions have integrated the ffamber ports and there
are quite a few papers where GROMACS is used in conjunction with AMBER FF.

I just wanted to double-check.

Many thanks in advance.


Dr. George Patargias
Postdoctoral Researcher
Biomedical Research Foundation
Academy of Athens
4, Soranou Ephessiou
115 27
Athens
Greece

Office: +302106597568




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