[gmx-users] g_membed deprecated?

Albert mailmd2011 at gmail.com
Wed Feb 6 16:49:00 CET 2013


  I am trying to build membrane system with g_menbed, but it said:

Back Off! I just backed up membed.dat to ./#membed.dat.2#
You can membed your protein now by:
mdrun -s input.tpr -membed membed.dat -o traj.trr -c membed.pdb -e 
ener.edr -nt 1 -cpt -1 -mn index.ndx -mp merged.top -v -stepout 100
Please cite:
Wolf et al, J Comp Chem 31 (2010) 2169-2174.

does it means that g_membed deprecated from Gromacs-4.6 and we must use 
mdrun instead?


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