[gmx-users] calculate the size of protein

[Kieu Thu Nguyen]

Hi,

What is the specific editconf command should i use to calculate the
dimensions of fitting box of the protein ?

Thanks and regards,
KT


On Fri, Feb 8, 2013 at 2:03 PM, Kieu Thu Nguyen <kieuthu2212 at gmail.com>wrote:

> Thank Tsjerk ! I mean that i want to determine the dimensions (x, y, z) of
> the protein
>
>
> On Fri, Feb 8, 2013 at 1:48 PM, Tsjerk Wassenaar <tsjerkw at gmail.com>wrote:
>
>> Hi KT,
>>
>> What do you mean with size?
>>
>> - circumscribed radius: editconf
>> - radius of gyration: g_gyrate
>> - dimensions of fitting box: editconf
>> - volume: g_sas
>>
>> Cheers,
>>
>> Tsjerk
>>
>> On Fri, Feb 8, 2013 at 5:55 AM, Kieu Thu Nguyen <kieuthu2212 at gmail.com
>> >wrote:
>>
>> > Dear all,
>> >
>> > I want to calculate the size of the protein. Which tool should i use for
>> > this purpose ?
>> >
>> > Thanks and regards,
>> > KT
>> > --
>> > gmx-users mailing list    gmx-users at gromacs.org
>> > http://lists.gromacs.org/mailman/listinfo/gmx-users
>> > * Please search the archive at
>> > http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>> > * Please don't post (un)subscribe requests to the list. Use the
>> > www interface or send it to gmx-users-request at gromacs.org.
>> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>> >
>>
>>
>>
>> --
>> Tsjerk A. Wassenaar, Ph.D.
>>
>> post-doctoral researcher
>> Biocomputing Group
>> Department of Biological Sciences
>> 2500 University Drive NW
>> Calgary, AB T2N 1N4
>> Canada
>> --
>> gmx-users mailing list    gmx-users at gromacs.org
>> http://lists.gromacs.org/mailman/listinfo/gmx-users
>> * Please search the archive at
>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>> * Please don't post (un)subscribe requests to the list. Use the
>> www interface or send it to gmx-users-request at gromacs.org.
>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>>
>
>