[gmx-users] Compare two bilayers made from two methods
jalemkul at vt.edu
Wed Feb 20 14:15:04 CET 2013
On 2/20/13 4:09 AM, Kieu Thu Nguyen wrote:
> Dear all,
> I do not know whether there is any difference between a big bilayer and the
> other bilayer made from merging two small bilayers made before.
> I make a bilayer from two methods:
> (1) merging two small bilayers (made before) by the below command
> genconf -f bilayer_small.gro -trj bilayer_small.xtc -nbox 2 1 1 -o
> (2) make a big bilayer directly
With suitable equilibration (tens or hundreds of ns), the starting configuration
of the membrane is largely irrelevant.
Justin A. Lemkul, Ph.D.
Department of Biochemistry
jalemkul[at]vt.edu | (540) 231-9080
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