[gmx-users] g_order for lipid bilayers

Felipe Pineda, PhD luis.pinedadecastro at lnu.se
Wed Feb 20 15:41:35 CET 2013


is it possible to apply g_order to a trajectory of a lipid bilayer when 
the carbon atoms of the acyl chains of the lipid molecules for which the 
SCD should be calculated are not numbered consecutively, i.e. the atom 
numbers corresponding to C21-C22-C23-... (sn-2 chain) are eg  23   22   
19 ...  and these appear in the corresponding group of the index file?

Thanks in advance,


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