[gmx-users] I can't figure out what is wrong with my .gro

[Xu Dong Huang]

Oh, you have an Additional line after vector size box…. I thought you said to remove that blank line

Xu Dong Huang
Chemical & Biochemical Engineering
Rutgers School of Engineering 
xudongh at eden.rutgers.edu 

On Jan 9, 2013, at 7:58 PM, Xu Dong Huang <xudongh at eden.rutgers.edu> wrote:

> @Justin,
> 
> I did that, and it still says I have 103. 
> 
> Xu Dong Huang
> Chemical & Biochemical Engineering
> Rutgers School of Engineering 
> xudongh at eden.rutgers.edu 
> 
> On Jan 9, 2013, at 7:49 PM, Xu Dong Huang <xudongh at eden.rutgers.edu> wrote:
> 
>> @Justin,
>> 
>> I did what you suggested, and I still can't load my molecule in VMD. Maybe I am still doing something wrong with the new line character thing. 
>> 
>> 
>> Xu Dong Huang
>> Chemical & Biochemical Engineering
>> Rutgers School of Engineering 
>> xudongh at eden.rutgers.edu 
>> 
>> On Jan 9, 2013, at 7:22 PM, Xu Dong Huang <xudongh at eden.rutgers.edu> wrote:
>> 
>>> @ Justin,
>>> 
>>> I laughed. :) Thank you. I can't believe I miss the smallest and most rudimentary things. 
>>> Thanks again,
>>> Xu Dong Huang
>>> Chemical & Biochemical Engineering
>>> Rutgers School of Engineering 
>>> xudongh at eden.rutgers.edu 
>>> 
>>> On Jan 9, 2013, at 7:20 PM, Justin Lemkul <jalemkul at vt.edu> wrote:
>>> 
>>>> 
>>>> 
>>>> On 1/9/13 7:16 PM, Xu Dong Huang wrote:
>>>>> @ Justin,
>>>>> 
>>>>> Thanks for always saving me from my mistakes. But I don't quite understand what is a new line character?
>>>>> 
>>>> 
>>>> The thing you get when you press enter.
>>>> 
>>>> http://en.wikipedia.org/wiki/Newline#In_programming_languages
>>>> 
>>>> Note that Google has plenty more to say ;)
>>>> 
>>>> There should not be a blank line at the end of the .gro file, though, but to be correctly parsed by VMD, the line must terminate with a '\n' character.  So at the end of your box vector line, hit return then backspace.
>>>> 
>>>> -Justin
>>>> 
>>>> -- 
>>>> ========================================
>>>> 
>>>> Justin A. Lemkul, Ph.D.
>>>> Research Scientist
>>>> Department of Biochemistry
>>>> Virginia Tech
>>>> Blacksburg, VA
>>>> jalemkul[at]vt.edu | (540) 231-9080
>>>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>>>> 
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