[gmx-users] The number of lipids

[Kieu Thu Nguyen]

Thank Justin and Peter so much !
Can i make a new box (it's size is not a multiples of the size of the
previous box) from a smaller lipid bilayer box ?

I don't see genconf -nbox can do that.



On Fri, Jan 11, 2013 at 9:20 AM, Peter Lai <pcl at uab.edu> wrote:

> Kieu Thu Nguyen <kieuthu2212 at gmail.com> wrote:
>
> >Dear All,
> >
> >I see in MD simulations, the number of lipids is 128 or multiples of
> >128.
> >Can someone tell me why ?
> >Whether can i choose another number of lipids ?
> >
> >Thanks in advance !
> >KT
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> probably because they are using original 128-lipid coordinates from
> someone like tieleman or klauda. You can use any arbitrary # of lipids
> appropriate to the size of your intended system (like scaling it so that an
> embedded protein is shielded by lipids from its periodic image)
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