[gmx-users] g_membed error

Kieu Thu Nguyen kieuthu2212 at gmail.com
Thu Jan 17 04:43:12 CET 2013

Dear All,

I am try to embed protein into membrane by using g_membed tool. I follow
steps in the article. Everything is alright until i use the command

g_membed -f input.tpr -p merged.top -xyinit 0.1 -xyend 1.0 -nxy 1000

the error appears

Pressure scaling more than 1%...

So, i try equilibrate the merged system before embed. But the error appears
: in protein, there are many bonds rotate more than 30 degrees.

What should i do ?

Thanks in advance !

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