[gmx-users] Re: meta-dynamics in gromacs-4.6

James Starlight jmsstarlight at gmail.com
Thu Jan 17 07:09:07 CET 2013


Thank you!

It's a good news!

James

2013/1/17 Carlo Camilloni <carlo.camilloni at gmail.com>:
> Hi,
>
> yes I can confirm you that PLUMED will be available for gromacs-4.6!
> We are currently testing it.
>
> Carlo
>
>> Message: 6
>> Date: Wed, 16 Jan 2013 12:54:11 -0500
>> From: Michael Shirts <mrshirts at gmail.com>
>> Subject: Re: [gmx-users] meta-dynamics in gromacs-4.6
>> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>> Message-ID:
>>       <CA+zJb=huGQ=3XNHCosfqwSX1MBKmaDU8Bd9U2T7LOojvN7AUkA at mail.gmail.com>
>> Content-Type: text/plain; charset=ISO-8859-1
>>
>> I assume PLUMED will be implemented for Gromacs 4.6, as many PLUMED
>> developers use Gromacs.  Perhaps any PLUMED lurkers on the list can
>> speak up. . . .
>>
>> On Wed, Jan 16, 2013 at 9:20 AM, Mark Abraham <mark.j.abraham at gmail.com> wrote:
>>> The GROMACS team has no plans for that. The usual problem here is that
>>> everybody would like every algorithm included, but that developers with
>>> time and experience are scarce :-) It's an open source project though, so
>>> anyone can do whatever they like. We're prepared to consider inclusions to
>>> the main project.
>>>
>>> Note that we're doing a major rework of the code base to C++ in the next
>>> year (or more), so people implementing new features may wish to consider
>>> that in their choice to write code :-)
>>>
>>> Mark
>>>
>>> On Tue, Jan 15, 2013 at 2:26 PM, James Starlight <jmsstarlight at gmail.com>wrote:
>>>
>>>> Dear Gromacs developers!
>>>>
>>>>
>>>> There is well-known plugin plumed which can be used for implementation
>>>> of meta-dynamics simulation if Gromacs-4.5. I wounder to know if it
>>>> possible to include some meta-dynamics options in the new gromacs
>>>> release ( similar to inclusion of essential dynamics sampling in
>>>> previous gromacs versions) ?
>>>>
>>>>
>>>> Thanks for attention,
>>>> James
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