[gmx-users] calculate area per lipid and bilayer thickness versus time
jalemkul at vt.edu
Mon Jan 21 13:31:44 CET 2013
On 1/21/13 5:12 AM, Kieu Thu Nguyen wrote:
> Dear All,
> I want to know that my lipid bilayer is equilibrated or not yet. So i want
> to calculate the change of area per lipid and the bilayer thickness versus
> Which tool or method should i use ?
Extract box vectors over time from the .edr file, then use a script of your own
creation to multiply them and divide by the number of lipids per leaflet. Of
course, that goes out the window if there is a protein present.
Justin A. Lemkul, Ph.D.
Department of Biochemistry
jalemkul[at]vt.edu | (540) 231-9080
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