[gmx-users] Problem with gromacs-4.6 compilation on Debian

James Starlight jmsstarlight at gmail.com
Mon Jan 21 17:09:03 CET 2013

Dear Gromacs Users!

I've successfully installed Gromacs-4.6 on my Debian mint system but
on another ( classic Debian) I've obtained error during make step (in
both cases I'm using 64 bit debian):

[ 55%] Building C object share/template/CMakeFiles/template.dir/template.c.o
Linking CXX executable template
/usr/local/cuda-5.0/lib64/libcudart.so: undefined reference to
/usr/local/cuda-5.0/lib64/libcudart.so: undefined reference to
collect2: ld returned 1 exit status
make[2]: *** [share/template/template] Error 1
make[1]: *** [share/template/CMakeFiles/template.dir/all] Error 2
make: *** [all] Error 2

In both cases I've used gcc-4.4 for compilation with cuda-5.
What's wrong?


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