[gmx-users] inquiring for solving trjconv problems

[Mehdi Bagherpour]

Hello Justin

My problem is fixed
I am very grateful for your help.

I used from bellow commands:
*
*
*1- make_ndx -f md.tpr
*
*    >r 1-16  ----->DNA have 32 residue
2- trjconv -s md.tpr -f wi_md.xtc -n index.ndx -o md.pdb -center -pbc mol
*
*    2-1- for centering ---> residue 1-16 ---> new group
*
*    2-2- for pbc ----> DNA ----> group 1*

You have been a big help to me.
So Thanks