[gmx-users] RMSD

[Justin Lemkul]

On 1/23/13 10:38 AM, Shima Arasteh wrote:
>
>
> Hi,
>
> Is it  possible to get RMSD of 10 different pdb files by GROMACS?

Relative to what?  Each other?  Some universal reference?

> g_rms may help?
>

That, or g_confrms, depending on what you're actually trying to measure.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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