[gmx-users] Visualize Protein ligand complex after simulation

Justin Lemkul jalemkul at vt.edu
Mon Jan 28 15:36:45 CET 2013

On 1/28/13 9:30 AM, Sainitin Donakonda wrote:
> Hello,
> Recently i started working on molecular dynamics on my protein ligand
> complex using gromacs i successfully did simulation but i dont know  how to
> visualize this protein-ligand complex this after MD simulation
> Can any body tell me how to do it?

All of the popular visualization programs (VMD, Chimera, PyMOL, etc) have 
tutorials available online.  Apply Google here.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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