[gmx-users] REG: grompp comment

Subramaniam Boopathi boopathiphd at gmail.com
Tue Jan 29 07:56:17 CET 2013 

Dear sir,
      i have successfully created .gro file after neccessary correction
made in .rtp file. In the grompp_d comment, i am facing following errror.
could how can i rectify this error.
        my comment is ./grompp_d -f em.mdp -c abnic2.gro -p abnic.top -o
abnic2.tpr
WARNING 1 [file em.mdp, line 12]:
  Unknown left-hand 'coloumbtype' in parameter file



WARNING 2 [file em.mdp, line 12]:
  Unknown left-hand 'rcoloumb' in parameter file


Generated 2278 of the 2278 non-bonded parameter combinations
Generating 1-4 interactions: fudge = 0.5
Generated 2278 of the 2278 1-4 parameter combinations

ERROR 1 [file abnic_Other.itp, line 54]:
  No default Bond types


ERROR 2 [file abnic_Other.itp, line 60]:
  No default Bond types


ERROR 3 [file abnic_Other.itp, line 61]:
  No default Bond types


ERROR 4 [file abnic_Other.itp, line 62]:
  No default Bond types


ERROR 5 [file abnic_Other.itp, line 63]:
  No default Bond types


ERROR 6 [file abnic_Other.itp, line 64]:
  No default Bond types


ERROR 7 [file abnic_Other.itp, line 65]:
  No default Bond types


ERROR 8 [file abnic_Other.itp, line 66]:
  No default Bond types


ERROR 9 [file abnic_Other.itp, line 67]:
  No default Bond types


ERROR 10 [file abnic_Other.itp, line 68]:
  No default Bond types


ERROR 11 [file abnic_Other.itp, line 69]:
  No default Bond types


ERROR 12 [file abnic_Other.itp, line 70]:
  No default Bond types


ERROR 13 [file abnic_Other.itp, line 71]:
  No default Bond types


ERROR 14 [file abnic_Other.itp, line 72]:
  No default Bond types


ERROR 15 [file abnic_Other.itp, line 73]:
  No default Bond types


ERROR 16 [file abnic_Other.itp, line 74]:
  No default Bond types


ERROR 17 [file abnic_Other.itp, line 150]:
  No default Angle types


ERROR 18 [file abnic_Other.itp, line 151]:
  No default Angle types


ERROR 19 [file abnic_Other.itp, line 152]:
  No default Angle types


ERROR 20 [file abnic_Other.itp, line 156]:
  No default Angle types


ERROR 21 [file abnic_Other.itp, line 157]:
  No default Angle types


ERROR 22 [file abnic_Other.itp, line 158]:
  No default Angle types


ERROR 23 [file abnic_Other.itp, line 159]:
  No default Angle types


ERROR 24 [file abnic_Other.itp, line 160]:
  No default Angle types


ERROR 25 [file abnic_Other.itp, line 161]:
  No default Angle types


ERROR 26 [file abnic_Other.itp, line 162]:
  No default Angle types


ERROR 27 [file abnic_Other.itp, line 163]:
  No default Angle types


ERROR 28 [file abnic_Other.itp, line 164]:
  No default Angle types


ERROR 29 [file abnic_Other.itp, line 165]:
  No default Angle types


ERROR 30 [file abnic_Other.itp, line 166]:
  No default Angle types


ERROR 31 [file abnic_Other.itp, line 167]:
  No default Angle types


ERROR 32 [file abnic_Other.itp, line 168]:
  No default Angle types


ERROR 33 [file abnic_Other.itp, line 169]:
  No default Angle types


ERROR 34 [file abnic_Other.itp, line 170]:
  No default Angle types


ERROR 35 [file abnic_Other.itp, line 171]:
  No default Angle types


ERROR 36 [file abnic_Other.itp, line 172]:
  No default Angle types


ERROR 37 [file abnic_Other.itp, line 173]:
  No default Angle types


ERROR 38 [file abnic_Other.itp, line 174]:
  No default Angle types


ERROR 39 [file abnic_Other.itp, line 175]:
  No default Angle types


ERROR 40 [file abnic_Other.itp, line 176]:
  No default Angle types


ERROR 41 [file abnic_Other.itp, line 177]:
  No default Angle types


ERROR 42 [file abnic_Other.itp, line 178]:
  No default Angle types


ERROR 43 [file abnic_Other.itp, line 179]:
  No default Angle types


ERROR 44 [file abnic_Other.itp, line 180]:
  No default Angle types


ERROR 45 [file abnic_Other.itp, line 181]:
  No default Angle types


ERROR 46 [file abnic_Other.itp, line 182]:
  No default Angle types


ERROR 47 [file abnic_Other.itp, line 183]:
  No default Angle types


ERROR 48 [file abnic_Other.itp, line 184]:
  No default Angle types


ERROR 49 [file abnic_Other.itp, line 185]:
  No default Angle types


ERROR 50 [file abnic_Other.itp, line 186]:
  No default Angle types


ERROR 51 [file abnic_Other.itp, line 187]:
  No default Angle types


ERROR 52 [file abnic_Other.itp, line 188]:
  No default Angle types


ERROR 53 [file abnic_Other.itp, line 189]:
  No default Angle types


ERROR 54 [file abnic_Other.itp, line 190]:
  No default Angle types


ERROR 55 [file abnic_Other.itp, line 191]:
  No default Angle types


ERROR 56 [file abnic_Other.itp, line 192]:
  No default Angle types


ERROR 57 [file abnic_Other.itp, line 193]:
  No default Angle types


ERROR 58 [file abnic_Other.itp, line 195]:
  No default Angle types


ERROR 59 [file abnic_Other.itp, line 196]:
  No default Angle types


ERROR 60 [file abnic_Other.itp, line 197]:
  No default Angle types


ERROR 61 [file abnic_Other.itp, line 202]:
  No default Proper Dih. types


ERROR 62 [file abnic_Other.itp, line 203]:
  No default Proper Dih. types


ERROR 63 [file abnic_Other.itp, line 204]:
  No default Proper Dih. types


ERROR 64 [file abnic_Other.itp, line 205]:
  No default Proper Dih. types


ERROR 65 [file abnic_Other.itp, line 206]:
  No default Proper Dih. types


ERROR 66 [file abnic_Other.itp, line 207]:
  No default Proper Dih. types


ERROR 67 [file abnic_Other.itp, line 220]:
  No default Proper Dih. types


ERROR 68 [file abnic_Other.itp, line 221]:
  No default Proper Dih. types


ERROR 69 [file abnic_Other.itp, line 222]:
  No default Proper Dih. types


ERROR 70 [file abnic_Other.itp, line 223]:
  No default Proper Dih. types


ERROR 71 [file abnic_Other.itp, line 224]:
  No default Proper Dih. types


ERROR 72 [file abnic_Other.itp, line 225]:
  No default Proper Dih. types


ERROR 73 [file abnic_Other.itp, line 226]:
  No default Proper Dih. types


ERROR 74 [file abnic_Other.itp, line 227]:
  No default Proper Dih. types


ERROR 75 [file abnic_Other.itp, line 228]:
  No default Proper Dih. types


ERROR 76 [file abnic_Other.itp, line 229]:
  No default Proper Dih. types


ERROR 77 [file abnic_Other.itp, line 230]:
  No default Proper Dih. types


ERROR 78 [file abnic_Other.itp, line 231]:
  No default Proper Dih. types


ERROR 79 [file abnic_Other.itp, line 232]:
  No default Proper Dih. types


ERROR 80 [file abnic_Other.itp, line 233]:
  No default Proper Dih. types


ERROR 81 [file abnic_Other.itp, line 234]:
  No default Proper Dih. types


ERROR 82 [file abnic_Other.itp, line 235]:
  No default Proper Dih. types


ERROR 83 [file abnic_Other.itp, line 236]:
  No default Proper Dih. types


ERROR 84 [file abnic_Other.itp, line 237]:
  No default Proper Dih. types


ERROR 85 [file abnic_Other.itp, line 238]:
  No default Proper Dih. types


ERROR 86 [file abnic_Other.itp, line 239]:
  No default Proper Dih. types


ERROR 87 [file abnic_Other.itp, line 240]:
  No default Proper Dih. types


ERROR 88 [file abnic_Other.itp, line 241]:
  No default Proper Dih. types


ERROR 89 [file abnic_Other.itp, line 242]:
  No default Proper Dih. types


ERROR 90 [file abnic_Other.itp, line 243]:
  No default Proper Dih. types


ERROR 91 [file abnic_Other.itp, line 244]:
  No default Proper Dih. types


ERROR 92 [file abnic_Other.itp, line 245]:
  No default Proper Dih. types


ERROR 93 [file abnic_Other.itp, line 246]:
  No default Proper Dih. types


ERROR 94 [file abnic_Other.itp, line 247]:
  No default Proper Dih. types


ERROR 95 [file abnic_Other.itp, line 248]:
  No default Proper Dih. types


ERROR 96 [file abnic_Other.itp, line 249]:
  No default Proper Dih. types


ERROR 97 [file abnic_Other.itp, line 250]:
  No default Proper Dih. types


ERROR 98 [file abnic_Other.itp, line 251]:
  No default Proper Dih. types


ERROR 99 [file abnic_Other.itp, line 252]:
  No default Proper Dih. types


ERROR 100 [file abnic_Other.itp, line 276]:
  No default Improper Dih. types


ERROR 101 [file abnic_Other.itp, line 277]:
  No default Improper Dih. types

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