[gmx-users] Re: Covariance file format

[Ankita naithani]

Hi Tsjerk,
Thank you for your reply. So, these are the eigenvectors. By any chance,
can we obtain the covariance matrix containing the information of residue
fluctuations I.e. the covariance information. Actually, it was needed to
obtain the dot plot delta ri dot delta rj so I don't think so I can use the
eigenvectors


Kind regards

Ankita

On Monday, July 1, 2013, Tsjerk Wassenaar wrote:

> Hi Ankita,
>
> The fie contains the eigenvectors as
>
> x1 y1 z1
> x2 y2 z2
> ...
> xN yN zN
>
> Hope it helps,
>
> Tsjerk
>
>
> On Mon, Jul 1, 2013 at 1:38 AM, Ankita naithani <ankitanaithani at gmail.com<javascript:;>
> >wrote:
>
> > Hi,
> >
> > I wanted to know the exact format of covariance.dat file as generated by
> > g_covar during covariance analysis. The file format mentioned in the
> manual
> > was not quite clear to understand. I need to use the matrix information n
> > so needed to know how the data is stored. My matrix is for 1992 calpha
> > atoms.
> >
> > It would be really helpful if someone could explain the file format.
> >
> > Kind regards,
> >
> > Ankita
> >
> >
> > --
> > Ankita Naithani
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>
> --
> Tsjerk A. Wassenaar, Ph.D.
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-- 
Ankita Naithani