[gmx-users] D-aminoacids in input file

Tsjerk Wassenaar tsjerkw at gmail.com
Mon Jul 1 10:41:02 CEST 2013

Hi Shima,

You can use the same parameters. There is no difference other than the
position of atoms.



On Mon, Jul 1, 2013 at 9:52 AM, Shima Arasteh
<shima_arasteh2001 at yahoo.com>wrote:

> Dear gmx users,
> I have D amino acids in my input .pdb file. The force field which I aim to
> use, is CHARMM. I am wondering if I need to modify aminoacids.rtp file? Or
> it would be OK if I use the same parameters as L aminoacids for D
> aminoacids?
> Thanks for your suggestions. They would be appreciated.
> Sincerely,
> Shima
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Tsjerk A. Wassenaar, Ph.D.

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