[gmx-users] energy groups for specific parts of the molecule
jalemkul at vt.edu
Tue Jul 2 02:04:47 CEST 2013
On 7/1/13 7:00 PM, Hovakim Grabski wrote:
> Dear Gromacs users,
> I ran a simulation between 6 molecules of Hypericin and 26 base pair long DNA, so for energy_grps I set HYP and DNA.
> Is there any way to get van der Waals and coulomb energy's of the interaction between hypericin and a specific parts of the DNA(phosphate groups for example)?
> Are there any tutorials?
Just make each molecule its own group and set those as your energygrps.
Justin A. Lemkul, Ph.D.
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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