[gmx-users] problem in g_membed

Justin Lemkul jalemkul at vt.edu
Wed Jul 3 02:42:33 CEST 2013

On 7/2/13 8:38 PM, Pavithra wrote:
> Dear Sir,
> thanks for the reply.
> what is the solution for this problem?
> can I just increase the box size? if so how?

Use editconf to set a new box size while retaining the coordinates of the 
current center.  Then add water with genbox.

> how to change the size without affecting the pope bilayer?

Change only the z dimension.



Justin A. Lemkul, Ph.D.
Postdoctoral Associate

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


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