[gmx-users] another error compiling 4.6.2 in GPU cluster

[Mark Abraham]

Those are remarks, not errors. Find the error.

Mark
On Jul 4, 2013 11:43 AM, "Albert" <mailmd2011 at gmail.com> wrote:

> Hello:
>
>  I am using the following configuration to compile gromacs-4.6.2 in a GPU
> cluster:
>
>
>
> CC=icc FC=ifort F77=ifort CXX=icpc CMAKE_PREFIX_PATH=/export/**
> intel/cmkl/include/fftw:/**export/mpi/mvapich2-1.8-rhes6 cmake ..
> -DGMX_MPI=ON -DCMAKE_INSTALL_PREFIX=/home/**albert/install/gromacs
> -DGMX_GPU=ON -DBUILD_SHARED_LIBS=OFF -DCUDA_TOOLKIT_ROOT_DIR=/**export/cuda5.0/cuda
> -DFFTWF_LIBRARY=/home/albert/**install/fftw-3.3.3/lib/**libfftw3f.so
>
> It was finished without any errors, But when I type
>
> make -j4
>
> it stopped at 66%:
>
>
> clared but never referenced
>   static const double* sy_const[] = {
>
> /home/albert/install/source/**gromacs-4.6.2/include/maths.h(**189):
> remark #177: function "gmx_numzero" was declared but never referenced
>   gmx_numzero(double a)
>   ^
> /home/albert/install/source/**gromacs-4.6.2/include/maths.h(**196):
> remark #177: function "gmx_log2" was declared but never referenced
>   gmx_log2(real x)
>   ^
> /home/albert/install/source/**gromacs-4.6.2/include/vec.h(**849): remark
> #177: function "calc_lll" was declared but never referenced
>   static void calc_lll(rvec box, rvec lll)
>               ^
> /home/albert/install/source/**gromacs-4.6.2/include/vec.h(**880): remark
> #177: function "m_rveccopy" was declared but never referenced
>   static void m_rveccopy(int dim, rvec *a, rvec *b)
>               ^
> /home/albert/install/source/**gromacs-4.6.2/include/vec.h(**892): remark
> #177: function "matrix_convert" was declared but never referenced
>   static void matrix_convert(matrix box, rvec vec, rvec angle)
>               ^
> /home/albert/install/source/**gromacs-4.6.2/include/grompp.**h(155):
> remark #177: variable "ds" was declared but never referenced
>   static const char *ds[d_maxdir+1] = {
>
> Linking CXX static library libmd_mpi.a
> [ 66%] Built target md
> make: *** [all] Error 2
>
> thank you very much
>
> Albert
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