[gmx-users] snapshot

Justin Lemkul jalemkul at vt.edu
Mon Jul 15 03:06:35 CEST 2013

On 7/14/13 9:03 PM, Rama wrote:
> Hi,
> How to get a snapshots in equal intervals of time (250ps) from production MD
> trajectory. I'm using -sep , -t0, -timestep but output came only one .gro
> file.

trjconv -skip -sep should work, but without exact command lines and the output 
you received (as well as the output of gmxcheck on the trajectory), it's hard to 
be more specific.  The -t0 and -timestep options will have no effect except to 
modify the trajectory - read the information in -h carefully!



Justin A. Lemkul, Ph.D.
Postdoctoral Associate

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


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