[gmx-users] extraction of PDB from clusters.pdb

[pooja_gupta at nccs.res.in]

try trjconv to extract the structures

pooja

> You can do it by using simple shell scripting
> On Jul 17, 2013 12:58 AM, "Shine A" <shine.a at iisertvm.ac.in> wrote:
>
>> Sir,
>>
>>         Using g_cluster I clustered snapshots in md trajectory using the
>> command as follows
>>
>> g_cluster -s sd_7.tpr -f traj7.trr -dist rmsd-distribution.xvg -o
>> clusters.xpm -sz cluster-sizes.xvg -tr cluster-transitions.xpm -ntr
>> cluster-transitions.xvg -clid cluster-id-over-time.xvg -cl clusters.pdb
>> -cutoff 0.25 -method gromos -dt 10
>>
>> Here I got clusters.pdb having central structures in each cluster. Is
>> there
>> any command line option available to extract all individual files from
>> clusters.pdb.
>> --
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