[gmx-users] glibc detected *** g_sas_d
nasiri1355 at gmail.com
Thu Jul 18 13:09:02 CEST 2013
Bellow are commands and error message:
1- trjconv_d -f traj.xtc -n maxclust.ndx -o traj_out.xtc
2- g_sas_d -f traj_out.xtc -n maxclust.ndx -o surface.xvg -nopbc
glibc detected *** g_sas_d: malloc(): memory corruption: 0x00000000016dfcd0
On Thu, Jul 18, 2013 at 1:01 PM, Justin Lemkul <jalemkul at vt.edu> wrote:
> On 7/18/13 6:52 AM, Rasoul Nasiri wrote:
>> Hello all,
>> I'm trying to know how the surface area of a nano-drop changes during the
>> evaporation in the vacuum.
>> When I filter the trajectory of non-evaporated molecules by trjconv and
>> g_sas for calculation of their surface, it usually crash (I'm using
>> of 4.5.5).
> What's the error message? What's your command?
> Is there still this issue in the 4.6.*? How it can be resolved?
> Have you tried version 4.6? That's the quickest way to know. If there
> are still problems, you'll need to provide more information.
> Justin A. Lemkul, Ph.D.
> Postdoctoral Fellow
> Department of Pharmaceutical Sciences
> School of Pharmacy
> Health Sciences Facility II, Room 601
> University of Maryland, Baltimore
> 20 Penn St.
> Baltimore, MD 21201
> jalemkul at outerbanks.umaryland.**edu <jalemkul at outerbanks.umaryland.edu> |
> (410) 706-7441
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