[gmx-users] glibc detected *** g_sas_d

[Rasoul Nasiri]

Bellow are commands and error message:

1-   trjconv_d -f traj.xtc -n maxclust.ndx -o traj_out.xtc

2-    g_sas_d  -f  traj_out.xtc  -n maxclust.ndx  -o surface.xvg  -nopbc


glibc detected *** g_sas_d: malloc(): memory corruption: 0x00000000016dfcd0


Rasoul


On Thu, Jul 18, 2013 at 1:01 PM, Justin Lemkul <jalemkul at vt.edu> wrote:

>
>
> On 7/18/13 6:52 AM, Rasoul Nasiri wrote:
>
>> Hello all,
>>
>> I'm trying to know how the surface area of a nano-drop changes during the
>> evaporation in the vacuum.
>>
>> When I filter the trajectory of non-evaporated molecules by trjconv and
>> use
>> g_sas for calculation of their surface, it usually crash (I'm using
>> version
>> of 4.5.5).
>>
>>
> What's the error message?  What's your command?
>
>
>  Is there still this issue in the 4.6.*? How it can be resolved?
>>
>>
> Have you tried version 4.6?  That's the quickest way to know.  If there
> are still problems, you'll need to provide more information.
>
> -Justin
>
> --
> ==============================**====================
>
> Justin A. Lemkul, Ph.D.
> Postdoctoral Fellow
>
> Department of Pharmaceutical Sciences
> School of Pharmacy
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> University of Maryland, Baltimore
> 20 Penn St.
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>
> jalemkul at outerbanks.umaryland.**edu <jalemkul at outerbanks.umaryland.edu> |
> (410) 706-7441
>
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