[gmx-users] mdrun error

Collins Nganou nganoucollins at gmail.com
Sun Jul 21 06:18:04 CEST 2013

Dear Users,

when trying to run the following command:
mdrun -v -deffnm protein-EM-solvated -c protein-EM-solvated.pdb
I have received the error below.

Reading file dna-EM-solvated.tpr, VERSION 4.5.5 (single precision)
Starting 2 threads

Program mdrun, VERSION 4.5.5
Source code file: /build/buildd/gromacs-4.5.5/src/mdlib/domdec.c, line: 6005

Fatal error:
Domain decomposition does not support simple neighbor searching, use grid
searching or use particle decomposition
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors

I am looking any suggestion that can help me to overcome this error.

Best regards

Albert Collins

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