[gmx-users] LAMBADA and InflateGRO2

[Catarina Santos]

Hi Atila,

Lambada was not able to properly identify the membrane reference atoms and
you get that error message when it tries to calculate the membrane centre
in the Z-axis.

Although I'm not an expert I would recommend you to use an index file for
the protein and the membrane (options -n1 and -n2, type lambada -h). In my
case this was the solution to that problem, but my system is simpler than
yours.

-- 

Catarina Santos
Research Student
Molecular Simulation Group
Instituto de Tecnologia Química e Biológica
Universidade Nova de Lisboa
Av.da República, Apartado 127
2781-901 Oeiras, Portugal