[gmx-users] Free Energy Simulations in Parallel
Quintin Sheridan
qsherida at nd.edu
Fri Jul 26 22:13:00 CEST 2013
Dear Gromacs Users,
Is it possible to run free energy calculations in parallel using mpirun?
If not, what is the fastest way to run free energy calculations. I am
trying to us the Bennet's Accepetance Ratio (g_bar) to get the free energy
of solvation for an ionic liquid based on the tutorial by Justin Lemkul. I
hav tried to decouple an ion pair as well as individual ions. In either
case the simulations run locally but when I try to run them in parrallel I
get the error:
Fatal error:
There is no domain decomposition for 8 nodes that is compatible with the
given box and a minimum cell size of 2.26125 nm
Thank You
Quintin Sheridan
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