[gmx-users] Fwd: Fatal error: number of coordinates in coordinate file (trp-b4ion.pdb, 25093) does not match topology (trp.top, 26684)

[Jonathan Saboury]

Files: http://www.sendspace.com/file/vxcnv3

Commands used: http://pastebin.com/raw.php?i=wPqfuUwc

What I want to do: I just want to run the protein without the ligand in
explicit water. Why is the coordinate file not matching topology?

http://www.gromacs.org/Documentation/Errors#Number_of_coordinates_in_coordinate_file_does_not_match_topologydoesn't
offer much help in this case. I know the problem is the number of
waters however.

Thanks :)