[gmx-users] Fwd: Fatal error: number of coordinates in coordinate file (trp-b4ion.pdb, 25093) does not match topology (trp.top, 26684)

Jonathan Saboury jsabou1 at gmail.com
Mon Jul 29 12:30:54 CEST 2013

Files: http://www.sendspace.com/file/vxcnv3

Commands used: http://pastebin.com/raw.php?i=wPqfuUwc

What I want to do: I just want to run the protein without the ligand in
explicit water. Why is the coordinate file not matching topology?

offer much help in this case. I know the problem is the number of
waters however.

Thanks :)

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