[gmx-users] Fwd: Command line to obtain multiple eigenvectors
Ashalatha Sreshty
sreshtyphd at gmail.com
Fri Mar 1 08:54:12 CET 2013
Dear Justin,
I did the same before but didnot get the eigenvectors. I am working on
Gromacs-4.5.4.
The actual command line used is as below
g_anaeig_d -f mlecdig-MD-0-202-noPBC.xtc -s mlecdig-MD-1.tpr -v
eigenvec-mlecdig-2-102.trr -eig eigenval-mlecdig-2-102.xvg -n mlecdig.ndx
-proj proj14.xvg -first 1 -last 4 -b 2 -e 102 -tu ns
However, I didnot get all the four eigenvectors in the output file, but
only consisted of the first eigenvector. Sample lines from the output I
pastign it here for your ready reference:
2.0000 2.89116
2.0050 3.68519
2.0100 2.44595
2.0150 1.92587
2.0200 2.11691
2.0250 1.26153
2.0300 0.98976
2.0350 1.23497
2.0400 1.27905
2.0450 2.31289
2.0500 1.23402
2.0550 2.09228
2.0600 2.20607
2.0650 2.00745
2.0700 2.32700
2.0750 1.98665
2.0800 2.56843
2.0850 2.51773
2.0900 2.86463
Please suggest.
Thank you,
Asha
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