[gmx-users] Hydrophobic contact cut-off

Kavyashree M hmkvsri at gmail.com
Tue Mar 26 20:20:55 CET 2013


Dear users,

Sorry for an off-topic question..

What is the distance cut-off considered for
hydrophobic contact in protein?
Some paper states 4-8Ang, while some other
considers only till 5Ang. It is reported that this
is a long range interaction.

Any information clarifying this doubt will be very
useful.

Thank you
Kavya



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