[gmx-users] g_msd for many molecules

[George Patargias]

Hello

I am trying to calculate the MSD of 8 molecules in a lipid bilayer with
g_msd. If I include the atoms of all these 8 molecules as a single group
in the index file, will g_msd calculate the MSD of the center of mass of
them or it will average over all atoms?


Thanks
George


Dr. George Patargias
Postdoctoral Researcher
Biomedical Research Foundation
Academy of Athens
4, Soranou Ephessiou
115 27
Athens
Greece

Office: +302106597568