[gmx-users] Fwd: do_dssp

[Justin Lemkul]

On 5/14/13 11:03 AM, Preeti Choudhary wrote:
> ---------- Forwarded message ----------
> From: Preeti Choudhary <preetichoudhary18111989 at gmail.com>
> Date: Tue, May 14, 2013 at 8:30 PM
> Subject: do_dssp
> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>
>
> I am facing problem while using do_dssp.I need to store secondary structure
> data every 100 ps.For this I am using -dt option.But I didn't get the
> concept of it,what is first time here?What exactly does this dt option do ?
>

The -dt option allows you to skip frames.  Since do_dssp is very slow, sometimes 
skipping frames is useful.

-Justin

-- 
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================