[gmx-users] Vritual Sites and simulation time-step

Mark Abraham mark.j.abraham at gmail.com
Thu May 30 10:11:09 CEST 2013


Manual 6.7?


On Thu, May 30, 2013 at 7:05 AM, James Starlight <jmsstarlight at gmail.com>wrote:

> Dear Gromacs users!
>
> In some discussions I've noticed that people told about usage of virtual
> sites which allow to increase time step of the simulation of such systems.
> >From manual and tutorial its not quite understand for me how with
> inclusion
> of such dummy atoms (which can be used to reduce number of atoms of the
> some solvent-like molecule or to mimic  electron pairs in the water for
> instance)  influence on time-step can be achieved ?
>
>
> James
> --
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