[gmx-users] double bond

Justin Lemkul jalemkul at vt.edu
Thu Oct 3 22:19:04 CEST 2013

On 10/3/13 4:15 PM, Ehsan Sadeghi wrote:
> Thanks Justin. I will try different bond parameters. I usually use PyMol or Chimera for visualization. Do you have any recommendation for a visualization software?

For quick visualization, VMD (but it often gets bonds wrong if they are not in 
line with its assumptions) and for rendering images and movies, PyMOL.  It's all 
a matter of personal preference.  None of them is perfect.



Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


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