[gmx-users] time evaluation of dimensions of the simulation cell

Baptiste Demoulin bat.demoulin at gmail.com
Wed Oct 9 16:12:28 CEST 2013


Hi,

you can use g_energy, and then select X-box and Y-box in the prompt.

Bests,

Baptiste


2013/10/9 Atila Petrosian <atila.petrosian at gmail.com>

> Dear gromacs usres
>
> I am doing simulation of lipid bilayer.
>
> I did 2 steps: 1) energy minimization, 2) equilibration.
>
> Before production run, I want to monitor dimensions of the simulation cell
> to test the stability of the simulation.
>
> On the other hands, I want to plot dimensions of the simulation cell as a
> function of time.
>
> What tool of gromacs is appropriate for obtaining time evaluation of
> dimensions of the simulation cell? How to do this?
>
>
> Any help will highly appreciated.
>
> Best wishes.
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>



More information about the gromacs.org_gmx-users mailing list