[gmx-users] DSSP problem

[Justin Lemkul]

On 10/12/13 6:08 PM, Mass wrote:
> Dear users;
> I am trying to run DSSP and have problem, I typed in terminal
> do_dssp -f bLac_orig_md2.trr -s bLac_orig_md2.tpr -sc Secondary_Structure_analysis_original_dss.xvg -ssdump
>
>
> and got the following error,
>
> Program do_dssp, VERSION 4.6.3
> Source code file: /home/mass/gromacs-4.6.3/src/gmxlib/gmxfio.c, line: 524
>
> Can not open file:
> bLac_orig_md2.trr
> For more information and tips for troubleshooting, please check the GROMACS
> website at http://www.gromacs.org/Documentation/Errors
>
> I can see the file bLac_orig_md2.trr in the directory
>
> any comments?
>

Please provide the copied and pasted output of ls -l in that directory.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441

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