[gmx-users] RNA simulation

[Justin Lemkul]

On 10/31/13 6:26 AM, Hossein Lanjanian wrote:
> Hi
>
> I'm going to study the molecular dynamics of an RNA(which has stem-loop
> structure) by comparison the native RNA structure and it's mutant to find
> the conformation changes of 3D structure. This RNA comprises 70
> nucleotides. Do you think that it would be possible in Gromacs.
>

Yes.  It's not so much a function of the software used, but the force field you 
choose for the simulations.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441

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