[gmx-users] is there any tool for flexibility?

[Albert]

On 09/01/2013 06:03 PM, Justin Lemkul wrote:
> Maybe g_msd or g_rmsf, but I don't think there's anything specifically 
> designed to address water molecules, and the term "flexibility" can 
> have far too many meanings ;)
>
> -Justin


thanks a lot for kind messages.

but there are a lot of water molecules in those region. Moreover, those 
water molecules can exchange with bulk environment. In this case, it 
would be very difficult to use g_msd or g_rmsf for this purpose.....

I don't know which tool or which method would be good to describe this 
observation...