[gmx-users] (no subject)

[Justin Lemkul]

On 9/3/13 7:20 AM, Prajisha Sujaya wrote:
> Respected sir,
>                I am facing a problem while simulating the tRNA molecule
> while converting pdb to gro,
> Fatal error:
> Atom OP3 in residue A 1 was not found in rtp entry RA5 with 31 atoms
> while sorting atoms.
>
> force field used  3 (AMBER96 protein, nucleic AMBER94), water model TIP3P.
>
> kindly give valuable suggestion how to rectify this error,
>

http://www.gromacs.org/Documentation/Errors#Atom_X_in_residue_YYY_not_found_in_rtp_entry

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441

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