[gmx-users] Re: Install gromacs4.6.3 with mpi
qiaoqin47 at gmail.com
Sat Sep 7 11:09:13 CEST 2013
On Sat, Sep 7, 2013 at 4:55 PM, Qin Qiao <qiaoqin47 at gmail.com> wrote:
> Dear all,
> I'm trying to install gromacs4.6.3 with mvapich2-1.9a on a local cluster
> and got the following error in step 'make':
> /usr/local/mvapich2-1.9a-gcc/lib/libmpich.a(mvapich_malloc.o): relocation
> R_X86_64_32 against `.bss' can not be used when making a shared object;
> recompile with -fPIC
> /usr/local/mvapich2-1.9a-gcc/lib/libmpich.a: could not read symbols: Bad
> I was using command
> "cmake .. -DCMAKE_INSTALL_PREFIX=/.../gromacs-4.6.3/
> -DGMX_BUILD_OWN_FFTW=ON -BUILD_SHARED_LIBS='no'
Also with flag -DGMX_MPI=ON, sorry
> and I thought the mvapich is compiled with --enable-shared...
> Could you give me some advice if possible? Thanks in advance.
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