[gmx-users] segfault when running the alchemistry.org ethanol solvation free energy tutorial
Christopher Neale
chris.neale at mail.utoronto.ca
Fri Sep 27 00:32:32 CEST 2013
My mistake .... I still get a segfault even when using double precision. (EM doesn't help, nor does switching to Berendsen pressure coupling).
Note that I can stop the segfault when running at init-lambda-state = 0 if I set:
couple-lambda0 = none
couple-lambda1 = none
instead of
couple-lambda0 = vdw-q
couple-lambda1 = none
This looks like http://bugzilla.gromacs.org/issues/1306
Thank you,
Chris.
-- original message --
Thank you Mark.
I actually found that it crashed wihout the -multi part (no hamiltonian exchange).
The command that I used was: mdrun -nt 1 -deffnm ethanol.1 -dhdl ethanol.1.dhdl.xvg
If I use the double precision version, there is no segfault. That's a working solution, but it is worrysome.
Thank you,
Chris.
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