[gmx-users] visualize gromacs trajectory in VMD

[sunyeping]

Dear all, 
I am trying to visualize gromacs trajectory in VMD. when I load my .gro file, the GUI window of VMD show a structure that seems to be correct. However, when I load .xtc or .trr file, the strucute shown is seriously deformed. Most bonds become very long and the structures looks very strange. Could anyone tell me how to show the trajectory correctly? Thanks.
Yeping Sun
Institute of Microbiology, Chinese Academy of Sciences