[gmx-users] (no subject)

Mark Abraham mark.j.abraham at gmail.com
Mon Apr 7 10:31:39 CEST 2014


Hi,

That should never happen - mdrun has asked your hardware what it is, and
got told there were no CPUs at all. Can you tell us some more about your
hardware and OS, please?

Mark


On Mon, Apr 7, 2014 at 9:19 AM, Meenakshi Rajput <ashi.rajput39 at gmail.com>wrote:

> I tried to do perform mdrun on myo.pdb by using command "g_mdrun -v -s
> m.tpr -o minim_traj.trr -c myo.gro -e minim_ener.edr". But I got the
> following error:-
> Reading file m.tpr, VERSION 4.6.5 (single precision)
> Using 1 MPI thread
>
> WARNING: Oversubscribing the available 0 logical CPU cores with 1
> thread-MPI threads.
>          This will cause considerable performance loss!
> Segmentation fault (core dumped)
> --
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