[gmx-users] Is something wrong wih my mdp?

[chenxianli]

Dear Kalyan:
Thank you so much for your reply! It's very helpful!
However, there's still  something I wanna know. In my MD simulation ,I fixed
part of RNA and relaxed the rest which I'm interested in to calculate the
ratio . In this situation, "constraints= all-bonds" can be replaced by
"constraints= h-bonds"?  (using the AMBER force field)

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