[gmx-users] Aromatic rings not plane after minimization

[Pierre THEVENET]

>
> I do not know how you do the magic connected with the topology
> derivation, but please make sure that all needed dihedrals were
> introduced. x2top, for instance, does not write dihedrals.
>
>
To produce the topology, I use pdb2gmx, I thought it would write the proper
dihedrals. Am I wrong?

Thanks for your help.