[gmx-users] SDS parameters

[ABEL Stephane 175950]

Hello Rebeca, 

Did you read my response to your (same) question in the AMBER mailing list? As I said in this forum, I have developed parameters for AMBER for SDS. They can be used with GROMACS (since I have the corresponding itp/top files). If you are interested, please contact me directly. 

Stéphane

------------------------------

Message: 3
Date: Wed, 16 Apr 2014 05:48:19 +0000
From: Rebeca Garc?a Fandi?o <regafan at hotmail.com>
To: "gmx-users at gromacs.org" <gmx-users at gromacs.org>
Subject: [gmx-users] SDS parameters
Message-ID: <DUB115-W45F8CDFB3F336DC8CC3590B7530 at phx.gbl>
Content-Type: text/plain; charset="iso-8859-1"

Hello,
I am trying to found AMBER or GROMACS/AMBER parameters for SDS (sodium dodecyl sulphate).
I
 have seen some papers simulating SDS with the Amber force field, but I
have not found nor the parameters for SDS included by default in AMBER,
neither any .top and .crd for the topology anywhere.
Could anyone help me to find SDS parameters for Amber?
Thanks a lot in advance.
Rebeca.

Dr. Rebeca Garc?a
Santiago de Compostela University
Spain