[gmx-users] problem with chimera opening gromacs 4.6.5 trajectories

Christian Wagner wagner at mail.sysu.edu.cn
Thu Apr 24 03:15:59 CEST 2014


There is a new release of Chimera i.e 1.9 where file handling has been otpimized: http://www.cgl.ucsf.edu/chimera/1.9/docs/relnotes/1.9.html 

Chris ----- Original Message -----

> From: "Mark Abraham" <mark.j.abraham at gmail.com>
> To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
> Sent: Thursday, April 24, 2014 4:10:34 AM
> Subject: Re: [gmx-users] problem with chimera opening gromacs 4.6.5
> trajectories

> /headscratch... I can't think of a reason why xtc output format would
> have
> changed from 4.5 to 4.6. There'd be no further change in 5.0, but if
> you're
> worried, grab the 5.0 beta and try it. The earlier you ask the
> chimera
> people, the better it is for you!

> Mark
> On Apr 23, 2014 8:05 PM, "Rafael I. Silverman y de la Vega" <
> rsilverm at ucsc.edu> wrote:

> > Hi all
> > I have been having problems getting chimera to open 4.6
> > trajectories. It
> > opens trajectory files from gromacs 4.5 just fine. (well, at least
> > some
> > chimera builds open the trajecotries).
> > I tried using gromacs 4.5 trjconv to make xtc readable by chimera,
> > but, of
> > course that didnt work on the trr made by 4.6.
> > Will gromacs 5.0 make chimera readable files, or should I go bother
> > the
> > chimera developers?
> > --
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