[gmx-users] Query in protein insertion in membrane

[Justin Lemkul]

On 12/3/14 7:21 AM, Priya Das wrote:
> Dear All,
>
> i have inserted protein in infalted lipid bilayer. (512 lipids)
> I need to delete almost 100 lipids.
> So should i reduce the scaling factor or increase the cutoff radius in this
> command.
>

Why is that a problem?  Presumably you just have a very large protein.

-Justin

> perl inflategro.pl system.gro 4 DPPC 14 system_inflated.gro 5 area.dat
>
>

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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