[gmx-users] gromacs.org_gmx-users Digest, Vol 128, Issue 15

soumadwip ghosh soumadwipghosh at gmail.com
Thu Dec 4 12:54:29 CET 2014

Dear Alex,
             as you can see in my previous mail, I have made groups in the
index files using make_ndx (gp no 10-17). My question is with the kind of
groups I have, how can I calculate H bonding between chain A and chain B in
presence of sodium . Should I merge gp 13 and 2 together and make a gp (say
18) and then use g_hbond for groups 18 and 14? i

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